Similar HOG based on domains to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0779858.2b.11c.8b with 1 members (bone morphogenetic protein)

Eumetazoa / Bilateria / Deuterostomia / Chordata / Vertebrata / Gnathostomata / Euteleostomi /

... /

Sarcopterygii / Tetrapoda / Amniota / Mammalia / Theria / Eutheria / Boreoeutheria / Laurasiatheria / Carnivora / Feliformia /

Felidae

Completeness score: 0.50

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Representative domain architecture:

Prevalence of repr. domain architecture within HOG:

91.9%

This HOG has 447 similar HOGs:

HOG ID	Deepest level	HOG size	Representative Domain Architecture	Prevalence	Similarity
HOG:E0790081	Metazoa	573		97.6%	2
HOG:E0778530	Eumetazoa	426		79.6%	2
HOG:E0778192	Eumetazoa	406		90.4%	2
HOG:E0759299	Deuterostomia	233		54.1%	2
HOG:E0746923	Gnathostomata	171		89.5%	2
HOG:E0780243	Eumetazoa	155		70.3%	2
HOG:E0739314	Euteleostomi	64		90.6%	2
HOG:E0751309	Gnathostomata	63		58.7%	2
HOG:E0647857	Panarthropoda	36		69.4%	2
HOG:E0627797	Brachycera	31		93.5%	2
HOG:E0626770	Schizophora	26		92.3%	2
HOG:E0622620	Drosophila	23		95.7%	2
HOG:E0656466	Protostomia	18		77.8%	2
HOG:E0656486	Protostomia	14		64.3%	2
HOG:E0655072	Protostomia	10		70.0%	2
HOG:E0707331	Episquamata	10		60.0%	2
HOG:E0537036	Lophotrochozoa	8		75.0%	2
HOG:E0591312	Arachnida	8		75.0%	2
HOG:E0670989	Eleutherozoa	5		80.0%	2
HOG:E0735843	Amniota	5		100.0%	2
HOG:E0775143	Bilateria	5		80.0%	2
HOG:E0714221	Diprotodontia	4		100.0%	2
HOG:E0756433	Chordata	4		100.0%	2
HOG:E0669796	Asteroidea	3		100.0%	2
HOG:E0756223	Chordata	407		93.6%	1

Showing 1 to 25 of 446 rows rows per page